Skill:
• The use of molecular visualisation software to analyse the structure of eukaryotic ribosomes
and a tRNA molecule
Ribosomes
- Ribosomes are made of protein (for stability) and ribosomal RNA (for catalytic activity)
- They consist of a large and small subunit:
- The small subunit contains an mRNA binding site
- The large subunit contains three tRNA binding sites – an aminoacyl (A) site, a peptidyl (P) site and an exit (E) site
- Ribosomes can be found either freely floating in the cytosol or bound to the rough ER (in eukaryotes)
- Ribosomes differ in size in prokaryotes and eukaryotes (prokaryotes = 70S ; eukaryotes = 80S)
Structure of a Ribosome
Transfer RNA (tRNA)
tRNA molecules fold into a cloverleaf structure with four key regions:
- The acceptor stem (3’-CCA) carries an amino acid
- The anticodon associates with the mRNA codon (via complementary base pairing)
- The T arm associates with the ribosome (via the E, P and A binding sites)
- The D arm associates with the tRNA activating enzyme (responsible for adding the amino acid to the acceptor stem)
Structure of tRNA
Molecular Visualisation
To view the structure of a ribosome or a tRNA molecule via an interactive pop-up, click on the name of the structure below:
* Hint: For the ribosome, select nucleic acids and then colour structure by chain to identify the two subunits and three tRNA binding sites
Ribosome and tRNA Molecules